Show simple item record

dc.contributor.authorTalbot, Anita T.
dc.contributor.authorSmith, Terry
dc.contributor.authorCairns, Michael T.
dc.date.accessioned2014-10-24T10:35:24Z
dc.date.available2014-10-24T10:35:24Z
dc.date.issued2008-10-04
dc.identifier.citationTalbot, AT,Smith, TJ,Cairns, MT (2009) 'Characterisation of the differentially regulated trout protein 1 (DRTP1) gene in rainbow trout (Oncorhynchus mykiss)'. Fish & Shellfish Immunology, 26 :589-598.en_US
dc.identifier.urihttp://hdl.handle.net/10379/4672
dc.descriptionJournal articleen_US
dc.description.abstractIncreased levels of differentially regulated trout protein 1 (DRTP1) mRNA transcripts have been reported in fish after activation of the acute phase response. While the function of the DRTP1 protein still remains to be elucidated, this study focused on the genomic organisation of the gene, the quantification of the DRTP1 transcript in various tissues, and the isolation and analysis of the 5' regulatory region of the DRTP1 gene in rainbow trout (Oncorhynchus mykiss). Analysis of the DRTP1 genomic and cDNA sequences showed the gene to consist of four exons separated by three introns. Tissue localisation of the DRTP1 gene was performed by Northern analysis and validated by quantitative real-time PCR (qPCR). Six tissues (liver, intestine, spleen, brain, pituitary, and hypothalamus) were analysed. The tissues with the most abundant transcripts were the liver and the pituitary, with lesser amounts detected in the intestine, hypothalamus, brain and spleen. Genome walking allowed the isolation of a 934 bp sequence of the 5' regulatory region of the gene which was cloned, sequenced and in which potential transcription factor binding sites were identified. Promoter fragments of decreasing size were generated and transiently transfected into the human hepatoma cell line (HepG2). Inducibility of the promoter was determined by stimulation of the HepG2 cells containing the constructs with dexamethasone, polyinosinic:polycytidylic acid (poly I:C) and lipopolysaccharide (LPS) and tumor necrosis factor-alpha (TNF alpha). One construct, containing two potential C-EBP/beta sites and two NF-kappa B sites, exhibited the highest promoter induction (6.34 fold +/- SEM 0.5) when stimulated with human TNF alpha. A slightly shorter fragment containing one C-EBP/beta site and one NF-kappa B site did not show any significant inducibility when treated with TNF alpha. The loss of the C-EBP/beta and NF-kappa B in the shorter construct suggests that these sites, either individually or in combination. are critical for the induction of the DRTP1 promoter by TNF alpha. (C) 2008 Elsevier Ltd. All rights reserved.en_US
dc.description.sponsorshipEnterprise Ireland - Basic Research Grant (#SC/2003/0461)en_US
dc.formatapplication/pdfen_US
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.relation.ispartofFish & Shellfish Immunologyen
dc.subjectQuantitative real-time PCR (qPCR)en_US
dc.subjectPromoteren_US
dc.subjectGenome walkingen_US
dc.subjectTransfectionen_US
dc.subjectLuciferaseen_US
dc.subjectLy-6/uPARen_US
dc.subjectNF-KAPPA-Ben_US
dc.subjectSuppression subtractive hybridizationen_US
dc.subjectNicotinic acetylcholine receptorsen_US
dc.subjectSalmon salmo salaren_US
dc.subjectPlasminogen activatoren_US
dc.subjectBinding sitesen_US
dc.subjectTranscriptionen_US
dc.subjectSuperfamilyen_US
dc.subjectExpressionen_US
dc.subjectIdentificationen_US
dc.titleCharacterisation of the differentially regulated trout protein 1 (DRTP1) gene in rainbow trout (Oncorhynchus mykiss)en_US
dc.typeArticleen_US
dc.date.updated2014-10-23T13:14:32Z
dc.identifier.doiDOI 10.1016/j.fsi.2008.09.013
dc.local.publishedsourcehttp://dx.doi.org/10.1016/j.fsi.2008.09.013en_US
dc.description.peer-reviewedpeer-reviewed
dc.contributor.funder|~|
dc.internal.rssid1338903
dc.local.contactTerry Smith, School Of Natural Sciences, Nui Galway. 2022 Email: terry.smith@nuigalway.ie
dc.local.copyrightcheckedNo
dc.local.versionACCEPTED
nui.item.downloads383


Files in this item

Attribution-NonCommercial-NoDerivs 3.0 Ireland
This item is available under the Attribution-NonCommercial-NoDerivs 3.0 Ireland. No item may be reproduced for commercial purposes. Please refer to the publisher's URL where this is made available, or to notes contained in the item itself. Other terms may apply.

The following license files are associated with this item:

Thumbnail

This item appears in the following Collection(s)

Show simple item record