Now showing items 1-12 of 12

  • Assessing FAIR data principles against the 5-Star open data principles 

    Hasnain, Ali; Rebholz-Schuhmann, Dietrich (Springer Verlag, 2018-08-02)
    Access to biomedical data is increasingly important to enable data driven science in the research community. The Linked Open Data (LOD) principles (by Tim Berner-Lee) have been suggested to judge the quality of data by its ...
  • Biomedical semantic resources for drug discovery platforms 

    Hasnain, Ali; Rebholz-Schuhmann, Dietrich (Springer Verlag, 2017-11-08)
    The biomedical research community is providing large-scale data sources to enable knowledge discovery from the data alone, or from novel scientific experiments in combination with the existing knowledge. Increasingly ...
  • Deep convolution neural network model to predict relapse in breast cancer 

    Jha, Alokkumar; Verma, Ghanshyam; Khan, Yasar; Mehmood, Qaiser; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (IEEE, 2018-12-17)
    A mishap in anti-cancer drug distribution is critical in breast cancer patients due to poor prediction model to identify the treatment regime in ER+ve and ER-ve (Estrogen Receptor (ER)) patients. The traditional method for ...
  • A deep learning approach to genomics data for population scale clustering and ethnicity prediction 

    Karim, Md. Rezaul; Zappa, Achille; Sahay, Ratnesh; Rebholz-Schuhmann, Dietrich (CEUR-WS.org, 2017-05-28)
    The understanding of variations in genome sequences assists us in identifying people who are predisposed to common diseases, solving rare diseases, and finding corresponding population group of the individuals from a ...
  • Extending largeRDFBench for multi-source data at scale for SPARQL endpoint federation 

    Hasnain, Ali; Saleem, Muhammad; Ngomo, Axel-Cyrille Ngonga; Rebholz-Schuhmann, Dietrich (IOS Press, 2018)
    Querying the Web of Data is highly motivated by the use of federation approaches mainly SPARQL query federation when the data is available through endpoints. Different benchmarks have been proposed to exploit the full ...
  • Improving data workflow systems with cloud services and use of open data for bioinformatics research 

    Karim, Md. Rezaul; Michel, Audrey; Zappa, Achille; Baranov, Pavel; Sahay, Ratnesh; Rebholz-Schuhmann, Dietrich (Oxford University Press, 2017-04-16)
    Data workflow systems (DWFSs) enable bioinformatics researchers to combine components for data access and data analytics, and to share the final data analytics approach with their collaborators. Increasingly, such systems ...
  • Linked data cased multi-omics integration and visualization for cancer decision networks 

    Jha, Alokkumar; Khan, Yasar; Mehmood, Qaiser; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (Springer Verlag, 2018-12-30)
    Visualization of Gene Expression (GE) is a challenging task since the number of genes and their associations are difficult to predict in various set of biological studies. GE could be used to understand tissue-gene-protein ...
  • Linked functional annotation for differentially expressed gene (DEG) demonstrated using Illumina Body Map 2.0 

    Jha, Alokkumar; Khan, Yasar; Iqbal, Aftab; Zappa, Achille; Mehdi, Muntazir; Sahay, Ratnesh; Rebholz-Schuhmann, Dietrich (CEUR-WS.org, 2015-12-09)
    Semantic Web technologies are core for the integration of disparate data resources. It can be used to exploit data from next generation sequencing (NGS) for therapeutic decisions regarding cancer. In this manuscript, ...
  • Querying web polystores 

    Khan, Ya; Zimmermann, Antoine; Jha, AlokKumar; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (IEEE, 2017-12-11)
    The database, semantic web, and linked data communities have proposed solutions that federate queries over multiple data sources using a single data model. Nowadays, the data retrieval requirements originating from versatile ...
  • SAFE: SPARQL federation over RDF data cubes with access control 

    Khan, Yasar; Saleem, Muhammad; Mehdi, Muntazir; Hogan, Aidan; Mehmood, Qaiser; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (BioMed Central, 2017-02-01)
    Several query federation engines have been proposed for accessing public Linked Open Data sources. However, in many domains, resources are sensitive and access to these resources is tightly controlled by stakeholders; ...
  • Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data 

    Jha, Alokkumar; Khan, Yasar; Mehdi, Muntazir; Karim, Md Rezaul; Mehmood, Qaiser; Zappa, Achille; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (BioMed Central, 2017-09-19)
    Next Generation Sequencing (NGS) is playing a key role in therapeutic decision making for the cancer prognosis and treatment. The NGS technologies are producing a massive amount of sequencing datasets. Often, these datasets ...
  • Where to search top-K biomedical ontologies? 

    Oliveira, Daniela; Butt, Anila Sahar; Haller, Armin; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (Oxford University Press, 2018-03-20)
    Motivation Searching for precise terms and terminological definitions in the biomedical data space is problematic, as researchers find overlapping, closely related and even equivalent concepts in a single or multiple ...