Evaluation of clarithromycin resistance and caga and vaca genotyping of helicobacter pylori strains from the west of ireland using line probe assays

Abstract

The prevalence of clarithromycin resistance-associated mutations, the cytotoxin-associated gene (cagA), and the various vacuolating cytotoxin (vacA) genotypes was determined in 50 gastric biopsy specimens from Helicobacter pylori-infected patients, using line probe assays, The clarithromycin resistance-associated mutation A2143G was detected in H. pylori strains from 26% of the specimens, which suggested that the high I ate of H, pylori treatment failure in Ireland may be partly attributable to the presence of these mutations,;UI strains examined carried the vacA s1 genotype. and 76% were cagA positive, Of these 50 specimens, 13 (26%) carried H. pylori strains with vacA midregion genotype mi, 29 (58%) carried strains that were m2, 1 (2%) was infected by a strain that was positive for both mi and m2, and 7 (14%) carried strains that could not be typed.