Show simple item record

dc.contributor.advisorFrank, Uri
dc.contributor.advisorSeoighe, Cathal
dc.contributor.authorDoonan, Liam B.
dc.date.accessioned2018-05-04T13:38:49Z
dc.date.issued2018-05-04
dc.identifier.urihttp://hdl.handle.net/10379/7334
dc.description.abstractThe advances and subsequent widespread use of next-generation sequencing, in particular transcriptomics, has allowed biologists to approach questions and study many more powerful and previously underappreciated model animals in much greater detail. One such creature is the cnidarian Hydractinia echinata, which is often used in stem cell, developmental and regenerative studies. Recent advances in transgenics and the near completion of a sequenced genome has propelled Hydractinia to the forefront of cnidarian biology. Here a new and up-to-date reference transcriptome for H. echinata is presented. Quality metrics and annotation results are comparable to other cnidarians and demonstrates a high level of completeness. It also reveals a well conserved genetic landscape, similar to other cnidarians and bilaterian invertebrates. Using this transcriptome as a reference, two superfamilies were examined in detail; the homeodomain proteins, and the lectins. Results show a highly diverse repertoire of these large groups, both in Hydractinia and in other early-diverging clades. The lectin complement was found to be not only expansive, but putatively highly conserved in function. However, results have also revealed a surprising amount of species-specific gene loss, particularly within the homeoboxes. Expansion and comparison of these findings in other metazoans has exposed a previously overlooked and potentially evolutionary important phylum-wide loss of galectins in all Cnidaria. These discoveries raise interesting questions about cnidarian life-history, including the possible implications of these loss events in the evolution of and diversification of hydrozoans such as Hydractinia, and for other cnidarians.en_IE
dc.publisherNUI Galway
dc.subjectCnidariaen_IE
dc.subjectTranscriptomeen_IE
dc.subjectEvolutionen_IE
dc.subjectHomeoboxen_IE
dc.subjectHomeodomainen_IE
dc.subjectLectinen_IE
dc.subjectHydractiniaen_IE
dc.titleTranscriptome analysis in Hydractinia echinata reveals species-specific and phylum-wide gene lossen_IE
dc.typeThesisen
dc.contributor.funderCollege of Science, National University of Ireland, Galwayen_IE
dc.local.noteUsing gene sequencing technologies, the genetic profile of the marine hydroid Hydractinia echinata was assembled. This high-quality assembly was used study the evolution of two important protein families; homeodomains and lectins. Results revealed losses of important genes in Hydractinia and more importantly across all species of cnidarians (coral, anemones, jellyfish).en_IE
dc.description.embargo2019-04-24
dc.local.finalYesen_IE
nui.item.downloads57


Files in this item

Attribution-NonCommercial-NoDerivs 3.0 Ireland
This item is available under the Attribution-NonCommercial-NoDerivs 3.0 Ireland. No item may be reproduced for commercial purposes. Please refer to the publisher's URL where this is made available, or to notes contained in the item itself. Other terms may apply.

The following license files are associated with this item:

Thumbnail
Thumbnail

This item appears in the following Collection(s)

Show simple item record