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dc.contributor.authorCairns, Michael T.
dc.contributor.authorJohnson, M. C.
dc.contributor.authorTalbot, A. T.
dc.contributor.authorPernmasani, J. K.
dc.contributor.authorMcNeill, R. E.
dc.contributor.authorHoueix, Benoit
dc.contributor.authorSangrador-Vegas, A.
dc.contributor.authorPottinger, T. G.
dc.date.accessioned2016-04-13T07:37:47Z
dc.date.available2016-04-13T07:37:47Z
dc.date.issued2008-03
dc.identifier.citationCairns, M. T., Johnson, M. C., Talbot, A. T., Pernmasani, J. K., McNeill, R. E., Houeix, B., Sangrador-Vegas, A. and Pottinger, T. G. (2008) 'A cDNA microarray assessment of gene expression in the liver of rainbow trout Oncorhynchus mykiss in response to a handling and confinement stressor'. Comparative Biochemistry and Physiology D-Genomics & Proteomics, 3 :51-66.en_IE
dc.identifier.issn1744-117X
dc.identifier.urihttp://hdl.handle.net/10379/5667
dc.description.abstractA purpose-designed microarray platform (Stressgenes, Phase 1) was utilised to investigate the changes in gene expression within the liver of rainbow trout during exposure to a prolonged period of confinement. Tissue and blood samples were collected from trout at intervals up to 648 h after transfer to a standardised confinement stressor, together with matched samples from undisturbed control fish. Plasma ACTH, cortisol, glucose and lactate were analysed to confirm that the neuroendocrine response to confinement was consistent with previous findings and to provide a phenotypic context to assist interpretation of gene expression data. Liver samples for suppression subtractive hybridisation (SSH) library construction were selected from within the experimental groups comprising “early” stress (2–48 h) and “late” stress (96–504 h). In order to reduce redundancy within the four SSH libraries and yield a higher number of unique clones an additional subtraction was carried out. After printing of the arrays a series of 55 hybridisations were executed to cover 6 time points. At 2 h, 6 h, 24 h, 168 h and 504 h 5 individual confined fish and 5 individual control fish were used with control fish only at 0 h. A preliminary list of 314 clones considered differentially regulated over the complete time course was generated by a combination of data analysis approaches and the most significant gene expression changes were found to occur during the 24 h to 168 h time period with a general approach to control levels by 504 h. Few changes in expression were apparent over the first 6 h. The list of genes whose expression was significantly altered comprised predominantly genes belonging to the biological process category (response to stimulus) and one cellular component category (extracellular region) and were dominated by so-called acute phase proteins. Analysis of the gene expression profile in liver tissue during confinement revealed a number of significant clusters. The major patterns comprised genes that were up-regulated at 24 h and beyond, the primary examples being haptoglobin, β-fibrinogen and EST10729. Two representative genes from each of the six k-means clusters were validated by qPCR. Correlations between microarray and qPCR expression patterns were significant for most of the genes tested. qPCR analysis revealed that haptoglobin expression was up-regulated approximately 8-fold at 24 h and over 13-fold by 168 h.en_IE
dc.description.sponsorshipThis project was part funded by the European Commission (Q5RS-2001-02211), Enterprise Ireland and the Natural Environment Research Council of the United Kingdom.en_IE
dc.formatapplication/pdfen_IE
dc.language.isoenen_IE
dc.publisherElsevieren_IE
dc.relation.ispartofComparative Biochemistry and Physiology D-Genomics & Proteomicsen
dc.rightsAttribution-NonCommercial-NoDerivs 3.0 Ireland
dc.rights.urihttps://creativecommons.org/licenses/by-nc-nd/3.0/ie/
dc.subjectRainbow trouten_IE
dc.subjectOncorhynchus mykissen_IE
dc.subjectStressen_IE
dc.subjectMicroarrayen_IE
dc.subjectGene expressionen_IE
dc.titleA cDNA microarray assessment of gene expression in the liver of rainbow trout (Oncorhynchus mykiss) in response to a handling and confinement stressoren_IE
dc.typeArticleen_IE
dc.date.updated2016-04-12T19:50:44Z
dc.identifier.doi10.1016/j.cbd.2007.04.009
dc.local.publishedsourcehttp://www.sciencedirect.com/science/article/pii/S1744117X0700055Xen_IE
dc.description.peer-reviewedpeer-reviewed
dc.contributor.funder|~|
dc.internal.rssid1144762
dc.local.contactMichael Cairns, Glycoscience Group, Ncbes, Biomedical Sciences, Dangan, Newcastle Rd. 2094 Email: michael.cairns@nuigalway.ie
dc.local.copyrightcheckedNo
dc.local.versionACCEPTED
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