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Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data
(BioMed Central, 2017-09-19)
Next Generation Sequencing (NGS) is playing a key role in therapeutic decision making for the cancer prognosis and treatment. The NGS technologies are producing a massive amount of sequencing datasets. Often, these datasets ...
Improving data workflow systems with cloud services and use of open data for bioinformatics research
(Oxford University Press, 2017-04-16)
Data workflow systems (DWFSs) enable bioinformatics researchers to combine components for data access and data analytics, and to share the final data analytics approach with their collaborators. Increasingly, such systems ...
Abstract A27: A linked data approach to discover HPV oncoprotiens and RB1 induced mutation associations for the retinoblastoma research
(American Association for Cancer Research, 2017-01)
Background: LOSS or GAIN in tumor suppressor gene RB1 play a significant role as in case of loss low penetrance where only 39% of eye at risk develops in retinoblastoma. This research covers the multiple mutation types and ...
Facilitating scientometrics in learning analytics and educational data mining - The LAK dataset
(IOS Press, 2016-11-06)
The Learning Analytics and Knowledge (LAK) Dataset represents an unprecedented corpus which exposes a near complete collection of bibliographic resources for a specific research discipline, namely the connected areas of ...
Where to search top-K biomedical ontologies?
(Oxford University Press, 2018-03-20)
Motivation
Searching for precise terms and terminological definitions in the biomedical data space is problematic, as researchers find overlapping, closely related and even equivalent concepts in a single or multiple ...
The colloquial WordNet: Extending Princeton WordNet with neologisms
(Springer International Publishing, 2017-05-27)
Princeton WordNet is one of the most important resources for natural language processing, but has not been updated for over ten years and is not suitable for analyzing the fast moving language as used on social media. We ...
A linked data visualiser for finite element biosimulations
(World Scientific Publishing, 2016)
Biosimulation models are used to understand the multiple or different causative factors that cause impairment in human organs. Finite Element Method (FEM) provide a mathematical framework to simulate dynamic biological ...
SAFE: SPARQL federation over RDF data cubes with access control
(BioMed Central, 2017-02-01)
Several query federation engines have been proposed for accessing public Linked Open Data sources. However, in many domains, resources are sensitive and access to these resources is tightly controlled by stakeholders; ...
MixedEmotions: An open-source toolbox for multi-modal emotion analysis
(IEEE, 2018-01-25)
Recently, there is an increasing tendency to embed the functionality of recognizing emotions from the user generated contents, to infer richer profile about the users or contents, that can be used for various automated ...
One size does not fit all: querying web polystores
(IEEE, 2019-01-17)
Data retrieval systems are facing a paradigm shift due to the proliferation of specialized data storage engines (SQL, NoSQL, Column Stores, MapReduce, Data Stream, and Graph) supported by varied data models (CSV, JSON, ...