Browsing Data Science Institute by Author "Zappa, Achille"
Now showing items 1-4 of 4
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A deep learning approach to genomics data for population scale clustering and ethnicity prediction
Karim, Md. Rezaul; Zappa, Achille; Sahay, Ratnesh; Rebholz-Schuhmann, Dietrich (CEUR-WS.org, 2017-05-28)The understanding of variations in genome sequences assists us in identifying people who are predisposed to common diseases, solving rare diseases, and finding corresponding population group of the individuals from a ... -
Improving data workflow systems with cloud services and use of open data for bioinformatics research
Karim, Md. Rezaul; Michel, Audrey; Zappa, Achille; Baranov, Pavel; Sahay, Ratnesh; Rebholz-Schuhmann, Dietrich (Oxford University Press, 2017-04-16)Data workflow systems (DWFSs) enable bioinformatics researchers to combine components for data access and data analytics, and to share the final data analytics approach with their collaborators. Increasingly, such systems ... -
Linked functional annotation for differentially expressed gene (DEG) demonstrated using Illumina Body Map 2.0
Jha, Alokkumar; Khan, Yasar; Iqbal, Aftab; Zappa, Achille; Mehdi, Muntazir; Sahay, Ratnesh; Rebholz-Schuhmann, Dietrich (CEUR-WS.org, 2015-12-09)Semantic Web technologies are core for the integration of disparate data resources. It can be used to exploit data from next generation sequencing (NGS) for therapeutic decisions regarding cancer. In this manuscript, ... -
Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data
Jha, Alokkumar; Khan, Yasar; Mehdi, Muntazir; Karim, Md Rezaul; Mehmood, Qaiser; Zappa, Achille; Rebholz-Schuhmann, Dietrich; Sahay, Ratnesh (BioMed Central, 2017-09-19)Next Generation Sequencing (NGS) is playing a key role in therapeutic decision making for the cancer prognosis and treatment. The NGS technologies are producing a massive amount of sequencing datasets. Often, these datasets ...