Johnson, M. P., Edwards, M., Bunker, F. & Maggs, C. A. 2005. "Algal epiphytes of Zostera marina: variation in assemblage structure from individual leaves to regional scale." Aquatic Botany 82, 12-26.
Davies A.J., Johnson M.P. 2006. "Coastline configuration disrupts the effects of large-scale climatic forcing, leading to divergent temporal trends in wave exposure." Estuarine Coastal and Shelf Science 69, 643-648.
Johnson M.P., Hanley M.E., Frost N.J., Mosley MWJ, and Hawkins S.J. 2008. The persistent spatial patchiness of limpet grazing. Journal of Experimental Marine Biology and Ecology. 365, 136 141.
Johnson, Mark P.(Ecological Society of America, 2008)
Hinojosa-Arango G., Maggs C. A. and Johnson M.P. Like a rolling stone: the mobility of maerl (corallinaceae) and the neutrality of the associated assemblages. Ecology 90, 517-528.
Johnson, M.P., Pye, S, and Allcock, A.L. 2008. Dispersal mode and assessments of recovery on the shores of Gruinard, the 'anthrax island'. Biodiversity and Conservation 17: 721 732.
Johnson, M.P., Jessopp M., Mulholland O.R., McInerney C., McAllen R., Allcock A. L. and Crowe T. P. What is the future for marine protected areas in Irish waters? Biology and Environment 108B(1): 11-17.
Johnson, M.P., Crowe T.P., McAllen R. and Allcock. A.L. 2008. Characterising the marine Natura 2000 network for the Atlantic region. Aquatic Conservation: Marine and Freshwater Research 18, 86 97.