Browsing by Author "Samwald, Matthias"

Now showing items 1-11 of 11

    • Establishing a distributed system for the simple representation and integration of diverse scientific assertions 

      Samwald, Matthias; Stenzhorn, Holger (Biomed, 2009)
      Information technology has the potential to increase the pace of scientific progress by helping researchers in formulating, publishing and finding information. There are numerous projects that employ ontologies and Semantic ...

    • Establishing a distributed system for the simple representation and integration of diverse scientific assertions 

      Samwald, Matthias; Stenzhorn, Holger (Biomed Central, 2011)
      Information technology has the potential to increase the pace of scientific progress by helping researchers in formulating, publishing and finding information. There are numerous projects that employ ontologies and Semantic ...

    • Federating Distributed Social Data to Build an Interlinked Online Information Society 

      Passant, Alexandre; Samwald, Matthias; Breslin, John; Decker, Stefan (2009)
      While research on the relation- ship between the Semantic Web and social media was originally motivated by the lack of semantics in mainstream Web 2.0 ser- vices, this vision can go much further, impacting society at large ...

    • Federating distributed social data to build an interlinked online information society 

      Passant, Alexandre; Samwald, Matthias; Breslin, John G.; Decker, Stefan (Institute of Electrical and Electronics Engineers (IEEE), 2009-11-01)

    • Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data 

      Samwald, Matthias (BioMed Central, 2010-12)
      One of the biggest obstacles to progress in modern pharmaceutical research is the difficulty of integrating all available research findings into effective therapies for humans. Studies of traditionally used pharmacologically ...

    • Linked open drug data for pharmaceutical research and development 

      Samwald, Matthias; Jentzsch, Anja; Bouton, Christopher; Kallesøe, Claus; Willighagen, Egon; Hajagos, Janos; Marshall, M; Prud'hommeaux, Eric; Hassenzadeh, Oktie; Pichler, Elgar; Stephens, Susie (Springer Nature, 2011-01-01)
      There is an abundance of information about drugs available on the Web. Data sources range from medicinal chemistry results, over the impact of drugs on gene expression, to the outcomes of drugs in clinical trials. These ...

    • Previewing Semantic Web Pipes 

      Phuoc, Danh Le; Polleres, Axel; Samwald, Matthias; Tummarello, Giovanni (Springer, 2008)
      In this demo we present a first implementation of Semantic Web Pipes, a powerful tool to build RDF-based mashups. Semantic Web pipes are defined in XML and when executed they fetch RDF graphs on the Web, operate on them, ...

    • Semantic senselab: implementing the vision of the semantic web in neuroscience 

      Samwald, Matthias; Chen, Huajun; Ruttenberg, Alan; Lim, Ernest; Marenco, Luis; Miller, Perry; Shepherd, Gordon; Cheung, Kei-Hoi (Elsevier BV, 2010-01-01)

    • Structured digital tables on the semantic web: toward a structured digital literature 

      Cheung, Kei-Hoi; Samwald, Matthias; Auerbach, Raymond K; Gerstein, Mark B (Wiley-Blackwell, 2010-08-24)
      In parallel to the growth in bioscience databases, biomedical publications have increased exponentially in the past decade. However, the extraction of high-quality information from the corpus of scientific literature has ...

    • The biopax community standard for pathway data sharing 

      Demir, Emek; Cary, Michael P; Paley, Suzanne; Fukuda, Ken; Lemer, Christian; Vastrik, Imre; Wu, Guanming; D'Eustachio, Peter; Schaefer, Carl; Luciano, Joanne; Schacherer, Frank; Martinez-Flores, Irma; Hu, Zhenjun; Jimenez-Jacinto, Veronica; Joshi-Tope, Geeta; Kandasamy, Kumaran; Lopez-Fuentes, Alejandra C; Mi, Huaiyu; Pichler, Elgar; Rodchenkov, Igor; Splendiani, Andrea; Tkachev, Sasha; Zucker, Jeremy; Gopinath, Gopal; Rajasimha, Harsha; Ramakrishnan, Ranjani; Shah, Imran; Syed, Mustafa; Anwar, Nadia; Babur, Özgün; Blinov, Michael; Brauner, Erik; Corwin, Dan; Donaldson, Sylva; Gibbons, Frank; Goldberg, Robert; Hornbeck, Peter; Luna, Augustin; Murray-Rust, Peter; Neumann, Eric; Reubenacker, Oliver; Samwald, Matthias; van Iersel, Martijn; Wimalaratne, Sarala; Allen, Keith; Braun, Burk; Whirl-Carrillo, Michelle; Cheung, Kei-Hoi; Dahlquist, Kam; Finney, Andrew; Gillespie, Marc; Glass, Elizabeth; Gong, Li; Haw, Robin; Honig, Michael; Hubaut, Olivier; Kane, David; Krupa, Shiva; Kutmon, Martina; Leonard, Julie; Marks, Debbie; Merberg, David; Petri, Victoria; Pico, Alex; Ravenscroft, Dean; Ren, Liya; Shah, Nigam; Sunshine, Margot; Tang, Rebecca; Whaley, Ryan; Letovksy, Stan; Buetow, Kenneth H; Rzhetsky, Andrey; Schachter, Vincent; Sobral, Bruno S; Dogrusoz, Ugur; McWeeney, Shannon; Aladjem, Mirit; Birney, Ewan; Collado-Vides, Julio; Goto, Susumu; Hucka, Michael; Novère, Nicolas Le; Maltsev, Natalia; Pandey, Akhilesh; Thomas, Paul; Wingender, Edgar; Karp, Peter D; Sander, Chris; Bader, Gary D (Springer Nature, 2010-09-01)

    • The semanticscience integrated ontology (sio) for biomedical research and knowledge discovery 

      Dumontier, Michel; Baker, Christopher JO; Baran, Joachim; Callahan, Alison; Chepelev, Leonid; Cruz-Toledo, José; Del Rio, Nicholas R; Duck, Geraint; Furlong, Laura I; Keath, Nichealla; Klassen, Dana; McCusker, James P; Queralt-Rosinach, Núria; Samwald, Matthias; Villanueva-Rosales, Natalia; Wilkinson, Mark D; Hoehndorf, Robert (Springer Nature, 2014-01-01)
      The Semanticscience Integrated Ontology (SIO) is an ontology to facilitate biomedical knowledge discovery. SIO features a simple upper level comprised of essential types and relations for the rich description of arbitrary ...